#NEXUS

begin data;
	dimensions  ntax=9 nchar=720;
	format datatype=rna interleave=no gap=-;
	matrix
	[       1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40  41  42  43  44  45  46  47  48  49  50]
	FR      GGC AAC GGU --- GUG UUU ACU GUU CCG AAG AAC AAU AAA AUA GAU CGG GCU GCU UGC AAA GAG CCU GAU AUG AAU AUG UAC UUA CAG AAA GGG GUC GGC GGU UUC AUC CGU CGC CGC CUU AAG ACU GUG GGU AUA GAC UUG AAC GAU CAA ACG AUC AAU CAA CGC CUG GCU CAA CAA GGU AGC CGU GAU GGG UCU UUG GCG ACG AUA GAC UUA UCG UCU GCU UCU GAC UCC AUC AGC GAC CGC CUA GUG UGG AGU UUU CUC CCA CCU GAG CUA UAU UCA UAU CUC GAC AUG AUU CGA AGC CAC UAC GGU UAC GUA --- AAU GGC AAG AUG AUU CGU UGG GAA CUA UUU UCG ACG AUG GGU AAU GGG UUC ACC UUU GAA CUA GAG UCC AUG AUU UUC UGG GCU AUA GUC AGG GCU ACU CAG AUC CAU UUU CGU --- AAC ACC GGA ACC AUU GGC AUC UAU GGG GAC GAU AUU AUA UGC CCC ACA GAG AUU GCA CCU CGC GUG CUG GAA GCA CUG AGC UUC UAC GGU UUC AAA CCG AAU CUA CGA AAG ACG --- UUC ACG UCC GGC UCU UUU CGC GAG AGC UGC GGC GCG CAC UAU UUC CGU GGU GUC GAU GUU AAA CCA UUU UAU AUC AAG AAA CCA AUC ACU GAC CUA UUC UCC CUA AUG CUU AUA CUU AAC CGU AUA CGC GGA UGG GGG GUA GUC AAC GGA AUAGCAGACCCACGCCUC
	MS2     GGG AAC GGA --- GUG UUU ACA GUU CCG AAG AAU AAU AAA AUA GAU CGG GCU GCC UGU AAG GAG CCU GAUAUGAAUAUGUACCUCCAGAAAGGGGUCGGUGCUUUCAUCAGACGCCGGCUCAAAUCCGUUGGUAUAGACCUGAAUGAUCAAUCGAUCAACCAGCGUCUGGCUCAGCAGGGCAGCGUAGAUGGUUCGCUUGCGACGAUAGACUUAUCGUCUGCAUCCGAUUCCAUCUCCGAUCGCCUGGUGUGGAGUUUUCUCCCACCUGAGCUAUAUUCAUAUCUCGAUCGUAUCCGCUCACACUACGGA---GUA---GAUGGCGAGACGAUACGAUGGGAACUAUUUUCCACAAUGGGAAAUGGGUUCACAUUUGAGCUAGAGUCCAUGAUAUUCUGGGCAAUAGUCAAAGCGACCCAAAUCCAUUUUGGU---AACGCCGGAACCAUAGGCAUCUACGGGGACGAUAUUAUAUGUCCCAGUGAGAUUGCACCCCGUGUGCUAGAGGCACUUGCCUACUACGGUUUUAAACCGAAUCUUCGUAAAACG---UUCGUGUCCGGGCUCUUUCGCGAGAGCUGCGGCGCGCACUUUUACCGUGGUGUCGAUGUCAAACCGUUUUACAUCAAGAAACCUGUUGACAAUCUCUUCGCCCUGAUGCUGAUAUUAAAUCGGCUACGGGGUUGGGGAGUUGUCGGAGGUAUGUCAGAUCCACGCCUC
	GA      GGC AAC GGU --- UUG UUU UCU GUU CCG AAG AAC AAU AAA AUA GAU CGG GCU GCC UGU AAG GAG CCU GAUAUGAAUAUGUACCUUCAGAAGGGGGCGGGAUCUUUUAUAAGAAAACGCCUUCGCUCCGUCGGUAUAGAUCUUAACGAUCAGACGCGCAAUCAGGAAUUAGCCCGACUUGGCAGCAUUGAUGGUUCGCUCGCUACUAUUGAUCUUAGUAGCGCUAGCGAUUCCAUCUCUGACCGUCUUGUCUGGGAUCUACUUCCGCCGCACGUUUAUUCAUACCUCGCUCGUAUCCGAACAUCGUUCACUAUGAUC---GAUGGGCGUUUACAUAAGUGGGGUCUAUUUUCUACCAUGGGUAAUGGCUUCACGUUCGAACUCGAGUCCAUGAUCUUUUGGGCUUUAAGCAAGAGCAUUAUGCUGUCCAUGGGUGUU---ACUGGCUCAUUAGGCAUCUACGGUGAUGAUAUAAUCGUCCCCGUUGAGUGUCGUCCAACUCUCCUUAAGGUACUAUCCGCUGUAAACUUUCUUCCUAAUGAGGAGAAAACA---UUUACAACGGGUUACUUUCGUGAAAGUUGUGGUGCCCACUUCUUCAAAGAUGCCGACAUGAAACCUUUUUACUGCAAGCGGCCAAUGGAAACCCUUCCCGAUGUCAUGUUGCUAUGCAACAGGAUAAGAGGUUGGCAGACCGUUGGUGGAAUGUCAGAUCCGCGACUC
	SP      UCA --- AAU AAA GCA GUC ACU GUU CCA AAG AAC AGU AAA ACU GAU CGC UGU AUU GCU AUC GAG CCC GGCUGGAAUAUGUUUUUCCAGUUAGGCGUCGGUGCAGUGCUACGCGAUAGGUUGCGUUUAUGGAAGAUUGAUCUUAAUGACCAAUCGACCAAUCAACGCCUCGCGCGUGAUGGGUCUCUGCUAAAUCAUUUAGCUACCAUAGACUUAUCUGCAGCCAGCGAUUCAAUCAGCCUUAAGCUUGUUGAGUUGCUCAUGCCCCCUGAAUGGUAUGACCUUCUAACGGAUCUCCGAUCCGAUGAAGGAAUACUGCCUGACGGGCGAGUUGUGACCUAUGAGAAAAUAUCCUCCAUGGGUAAUGGCUACACUUUCGAACUCGAGUCGCUUAUUUUUGCGGCUAUCGCUCGAAGUGUGUGCGAGUUACUGGAAAUUGACCAAUCUACUGUUAGCGUGUACGGGGAUGAUAUAAUCAUCGAUACCCGUGCCGCAGCUCCAUUAAUGGAUGUCUUUGAGUACGUCGGGUUCACUCCUAACAGAAAGAAAACG---UUCUGCGAUGGACCCUUCCGCGAAUCGUGCGGUAAGCACUGGUUCCAAGGGGUAGAUGUAACGCCCUUUUACAUACGACGACCAAUACGUUGCCUAGCCGAUAUGAUACUUGUAUUAAAUAGUAUCUAUAGGUGGGGCACUGUUGAUGGCAUAUGGGAUCCUAGAGCA
	NL95    UCG --- AAU AAA GCA GUC ACU GUU CCA AAG AAC AGU AAA ACU GAU CGC UGC AUU GCU AUC GAG CCC GGCUGGAAUAUGUUUUUCCAGUUAGGCGUCGGUGCUGUGCUCCGUGAUCGGUUGCGCCUUUGGCAUAUUGAUCUCAAUGAUCAAUCUGUUAAUCAGCGCCUCGCACGUGAUGCAUCGCAGUUGGACCAUUUGGCCACUGUCGAUUUAUCAGCAGCAAGCGAUUCGAUAAGCUUACGGCUUGUUGAACUGCUAAUGCCGCCUGCUUGGUUUGAUCUCCUGACCGAUCUCCGAUCGGACCAGGGAAUCCUGCCUGACGGGCGUGUCGUUACUUACGAGAAAAUAUCCUCCAUGGGUAAUGGCUACACUUUUGAGCUAGAGUCGUUAAUUUUCGCGGCUCUCGCCAGAAGUGUGUGCGAGUUAUUGGACCUUGACCAGUCAACUGUCAGCGUGUACGGUGAUGAUAUAAUCAUCGAUUCACGUGCCGCUGAUGUCCUUAUGGCGGUUUUCGAGUAUGUUGGGUUUACGCCUAAUCGAAAGAAAACU---UUCAUUAAGGGCCCCUUUAGAGAGUCGUGCGGAAAGCACUGGCACUCCGGGGUUGACGUAACGCCCUUUUACAUACGCCGCCCAAUCCGCUGCCUAGCCGACAUGAUACUUGUAUUGAACAGUAUCUACCGGUGGGGUACGAUUGACGGUGUGUGGGAUCCUAGGGUA
	M11     CCU UUC AAU AAA GCA GUU ACU GUA CCA AAG AAC AGU AAA ACU GAU CGC UGU AUA GCC AUC GAA CCU GGCUGGAAUAUGUUUUUCCAGCUAGGUAUCGGUGGUGUUAUACGCGAAAAGUUGCGUUUGUGGGGCAUCGAUCUGAAUGAUCAGACGAUUAACCAAACGCGCGCAUAUUUAGGCAGCCGUGAUGAUAAUCUCGCCACGGUGGAUCUCUCAAGAGCUAGCGAUACUAUUUCGCUUGCCCUUGUUGAGCUCCUUAUGCCUCCUGAGUGGUUUAAGGUCCUGUUGGCCUUAAGAUCACCCAAGGGCAUCUUGCCAGAUGGUACCGUCAUUACUUAUGAGAAAAUAUCCUCAAUGGGUAAUGGCUAUACCUUCGAGCUUGAGUCGCUUAUAUUUGCGGCUCUUGCUCGGUCUUUAUGCGAAUUACUGGGCUUACGACCGUCAGAUGUUACGGUCUAUGGCGAUGACAUAAUAUUGCCAUCAGACGCGUGCAGUCCUCUAGUUGAAGUUUUCUCCUAUGUUGGUUUUCGUACCAACAAGAAGAAAACG---UUUUCUAGUGGACCGUUCCGAGAGUCGUGCGGAAAGCACUACUUUUUGGGCGUUGACGUCACACCUUUCUACAUACGUCGCCGUAUAGUGAGUCCCUCCGAUCUCAUACUGGUUUUGAACCAGAUGUAUCGUUGGGCCACAAUUGACGGCGUAUGGGAUCCUAGGGUA
	MX1     CCU UUC AAU AAA GCA GUU ACU GUA CCA AAG AAC AGU AAA ACU GAU CGC UGC AUC GCU AUC GAG CCA GGCUGGAAUAUGUUUUUCCAGUUGGGCAUUGGUGGCGUAAUUCGCGAAAAGUUGCACUUGUGGAAUAUCGACCUGAAUGAUCAGACGAUUAACCAGGUGCGCGCAUAUUCAGGCAGCUGUAGCAAUGAACUUGCUACAGUGGAUCUCUCGAGCGCGAGUGAUACUAUUUCGCUUGCGCUCGUUGAGCUCCUGCUACCCCCUGCGUGGUUUAAAGUCCUUACGGACCUUAGGUCACGAAGGGGUAUGUUGCCAGACGGUAGAAUCAUUACCUAUGAGAAAAUUUCCUCAAUGGGUAACGGUUUCACCUUCGAGCUCGAGUCGCUUAUAUUUGCAGCUCUUGCUCGGUCUUUAUGCGAGUUACUGAACUUACAACCGUCGAGUGUCACGGUCUAUGGCGAUGAUAUUAUAUUGCCAUCAGACGCGUGCAGCUCGUUGAUUGAAGUUUUCUCCUACGUAGGUUUUAGAACCAACGAGAAGAAGACC---UUUUUCGACGGGCCGUUCCGAGAGUCGUGCGGAAAGCACUACUUUAUGGGCGUUGACGUCACACCUUUCUACAUACGCCACCGUAUAGUGAGUCCCUCUGAUCUCAUACUGGUUUUGAACCAGAUGUAUCGUUGGGCCACGAUUGAUGGCGUAUGGGAUCCUAGGGUA
	QB      CCU UUU AAU AAA GCA GUU ACU GUA CCU AAG AAC AGU AAG ACA GAU CGU UGU AUU GCU AUC GAA CCU GGUUGGAAUAUGUUUUUCCAACUGGGUAUCGGUGGCAUUCUACGCGAUCGGUUGCGUUGCUGGGGUAUCGAUCUGAAUGAUCAGACGAUAAAUCAGCGCCGCGCUCACGAAGGCUCCGUUACUAAUAACUUAGCAACGGUUGAUCUCUCAGCGGCAAGCGAUUCUAUAUCUCUUGCCCUCUGUGAGCUCUUAUUGCCCCUAGGCUGGUUUGAGGUUCUUAUGGACCUCAGAUCACCUAAGGGGCGAUUGCCUGACGGUAGUGUUGUUACCUACGAGAAGAUUUCUUCUAUGGGUAACGGUUACACAUUCGAGCUCGAGUCGCUUAUUUUUGCUUCUCUCGCUCGUUCCGUUUGUGAGAUACUGGACUUAGACUCGUCUGAGGUCACUGUUUACGGAGACGAUAUUAUUUUACCGUCCUGUGCAGUCCCUGCCCUCCGGGAAGUUUUUAAGUAUGUUGGUUUUACGACCAAUACUAAAAAGACU---UUUUCCGAGGGGCCGUUCAGAGAGUCGUGCGGCAAGCACUACUAUUCUGGCGUAGAUGUUACUCCCUUUUACAUACGUCACCGUAUAGUGAGUCCUGCCGAUUUAAUACUGGUUUUGAAUAACCUAUAUCGGUGGGCCACAAUUGACGGCGUAUGGGAUCCUAGGGCC
	PP7     GAC AGC --- CGG UUC GAU UUU GUC GCU AAG ACC GCG AAG GCG GUU CGC UUC AUC GCU AUG GAG CCA GAACUUAACAUGCUGCUGCAGAAAUCUGUAGGAGACACGAUAAGGGCUGCUCUGCGGAAAGCGGGUAUCGAUCUCAAUACCCAGCGACUAAAUCAAGAUCUUGCGUACCACGGAUCCGUUUUUCGGAAUCUCGGUACGAUAGAUCUGUCUAGCGCUUCCGAUACGUUAAGCAUUGAACUCGUGCGGCAGUACCUGCCGAAGCGGUUUCUCCGCUAUGUAUUGGAUCUCCGAACCCCCUACACGAGUGUA---GGUGGUAAGAAGCACAGGCUCGAGAAGGUCGCUUCGAUGGGCAACGGGUUCAUUUUUGAACUCCAGAGCCUCAUCUACGCAGCCUUCGCGCAUGCCAUGACGCUAGUAGUAGGAGGAAGAGAAUGCGACAUAGCCAUUUACGGCGAUGAUAUCAUCGUCAGUGAAUGCGUAGUAGAGCCUCUGAUGCAGUUCCUCGAAUGGCAUGGGUUCUGCCCCAAUCUCGAUAAGAGUUAUUGGGGAGGGGAUCCAUUCCGCGAGUCCUGCGGGAAGCACUACUUCGCUGGUCGCGACGUUACCCCUGUCUACGUGAAGGGGGCCCUGGAUAACCUACCUGCCCUUUUCCGUCUCUUCAACUCGUUGAAGCGAUGGGAGGAGCAAACAGGUAUCCGGAUCCCUGACACG
	;
end;

begin mrbayes;
	set autoclose=yes;
	charset first_pos  = 1-720\3;
	charset second_pos = 2-720\3;
	charset third_pos  = 3-720\3;
	partition by_codon = 3:first_pos,second_pos,third_pos;
	lset nst=6 rates=invariant sitepartition=by_codon;
	usertree = (((FR:0.09378,MS2:0.08644):0.09093,GA:0.18433):0.06471,
	           ((SP:0.09233,NL95:0.09535):0.05976,((M11:0.06630,MX1:0.07736):
	           0.05789,QB:0.11924):0.03747):0.09036,PP7:0.26743);
	constraint first = m11 mx1 qb;
	mcmcp ngen=100 printfreq=1 samplefreq=50 nchains=4 savebrlens=yes;
end;